Rv0478 - deoxyribose-phosphate aldolase deoC

Expression: Most Significant Conditions for Rv0478

Protein Domains

Gene Information
Locus	Rv0478
Symbol	deoC
Gene Name	deoxyribose-phosphate aldolase deoC
Location	567222 - 567896 (+)
Species	Mycobacterium tuberculosis H37Rv complete genome.
Length	Gene:675 bp Protein:225 aa
External Links	Tuberculist Target Gene Information String Protein-Protein Interactions STITCH Chemical-Protein Interactions Search Google Scholar
Orthologs
Orthogroup Number	28073
Related Genes	Acel_0572 CE0401 cg0458 DIP0273 DIP0377 jk1923 MAP3971 MAV_4672 Mkms_0659 ML2451 Mmcs_0646 MSMEG_0922 MSMEG_3089 MT0496 MUL_4546 Mvan_0811 nfa52030 PPA1214 SAV3346
Transcriptional Regulation
Operons	View gene in operon browser
Regulatory Network	Search for regulators of Rv0478
Expression Correlation	Genes with Correlated Expression Scatterplot of Gene Expression

Sequence

Proteins

>Rv0478 Transcript 1
MLGQPTRAQLAALVDHTLLKPETTRADVAALVAEAAELGVYAVCVSPSMVPVAVQAGGVR
VAAVTGFPSGKHVSSVKAHEAAAALASGASEIDMVIDIGAALCGDIDAVRSDIEAVRAAA
AGAVLKVIVESAVLLGQSNAHTLVDACRAAEDAGADFVKTSTGCHPAGGATVRAVELMAE
TVGPRLGVKASGGIRTAADAVAMLNAGATRLGLSGTRAVLDGLS*

Genomic Sequence

>Rv0478
GTGCTCGGCCAACCGACTCGGGCGCAGTTGGCCGCGCTGGTAGACCACACCCTGCTCAAG
CCTGAGACCACCCGTGCCGATGTGGCCGCGCTGGTCGCCGAAGCCGCCGAACTCGGCGTC
TACGCGGTCTGCGTGTCGCCGTCGATGGTGCCAGTTGCGGTCCAAGCCGGTGGTGTGCGG
GTTGCGGCGGTGACGGGCTTCCCGTCGGGCAAGCACGTGTCCTCGGTCAAGGCGCATGAG
GCGGCTGCGGCCCTGGCATCCGGCGCCAGTGAGATCGACATGGTCATCGACATCGGGGCT
GCGCTGTGCGGTGACATCGACGCAGTGCGCTCCGACATCGAGGCGGTGCGTGCCGCTGCG
GCCGGGGCTGTGCTCAAGGTGATCGTGGAGTCGGCGGTGCTGTTGGGACAGTCAAACGCG
CACACGTTGGTGGATGCGTGTCGTGCCGCCGAGGATGCCGGTGCCGACTTCGTCAAAACC
TCGACTGGGTGTCATCCGGCCGGCGGGGCCACGGTGCGTGCCGTCGAGCTGATGGCCGAG
ACGGTCGGCCCTCGGCTAGGGGTCAAAGCCAGCGGTGGGATCCGCACCGCCGCCGACGCG
GTCGCGATGCTCAACGCCGGTGCCACCAGGTTGGGCCTGTCCGGCACCCGGGCGGTGCTC
GATGGGCTCAGCTGA

Community Annotations Pending Curatorial Review

Field	Value	Status	Creator	Date
Interaction	Transcription Rv0477	active	sourish10	2012-10-05
	Co-expression (Functional linkage) SL. Mueller-Ortiz, E. Sepulveda et al. Decreased infectivity despite unaltered C3 binding by a DeltahbhA mutant of Mycobacterium tuberculosis. Infect. Immun. 2002
Interaction	Transcription Rv0476	active	gaat3s	2012-10-05
	Co-expression (Functional linkage) SL. Mueller-Ortiz, E. Sepulveda et al. Decreased infectivity despite unaltered C3 binding by a DeltahbhA mutant of Mycobacterium tuberculosis. Infect. Immun. 2002
Interaction	Transcription Rv0475	active	sourish10	2012-10-05
	Co-expression (Functional linkage) SL. Mueller-Ortiz, E. Sepulveda et al. Decreased infectivity despite unaltered C3 binding by a DeltahbhA mutant of Mycobacterium tuberculosis. Infect. Immun. 2002
Interaction	RegulatedBy Rv3676	active	yamir.moreno	2012-10-05
	E.coli orthology based inference. Orthologous pair regulator-target found in E.coli. G. Balázsi, AP. Heath et al. The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest. Mol. Syst. Biol. 2008
Interaction	RegulatedBy Rv3676	active	yamir.moreno	2012-10-05
	E.coli orthology based inference. Orthologous pair regulator-target found in E.coli. authors,M. Madan Babu,SA. Teichmann,L. Aravind Evolutionary dynamics of prokaryotic transcriptional regulatory networks. J. Mol. Biol. 2006