Rv1000c - conserved hypothetical protein

Expression: Most Significant Conditions for Rv1000c

Protein Domains

Gene Information
Locus	Rv1000c
Symbol
Gene Name	conserved hypothetical protein
Location	1116531 - 1117148 (-)
Species	Mycobacterium tuberculosis H37Rv complete genome.
Length	Gene:618 bp Protein:206 aa
External Links	Tuberculist Target Gene Information String Protein-Protein Interactions STITCH Chemical-Protein Interactions Search Google Scholar
Orthologs
Orthogroup Number	3611
Related Genes	MAV_1124 Mkms_4364 ML0190 Mmcs_4278 MSMEG_5451 MT1029 MUL_4665 Mvan_4812 nfa36260 SAV1131
Transcriptional Regulation
Operons	View gene in operon browser
Regulatory Network	Search for regulators of Rv1000c
Expression Correlation	Genes with Correlated Expression Scatterplot of Gene Expression

Sequence

Proteins

>Rv1000c Transcript 1
MCDKLGGVAIAVQGALFEHNERRQLGDGAFIDIRSGWLTGGEELLDALLSTVPWRAERRQ
MYDRVVDVPRLVSFHDLTIEDPPHPQLARMRRRLNDIYGGELGEPFTTAGLCYYRDGSDS
VAWHGDTIGRGSTEDTMVAIVSLGATRVFALRPRGRGPSLRLPLAHGDLLVMGGSCQRTF
EHAVPKTSAPTGPRVSIQFRPRDVR*

Genomic Sequence

>Rv1000c
ATGTGCGATAAGCTTGGCGGCGTGGCGATCGCGGTTCAAGGCGCGCTCTTCGAGCACAAC
GAGCGAAGACAGCTCGGCGACGGAGCCTTTATCGACATCCGTTCGGGCTGGCTGACCGGC
GGCGAAGAACTGCTGGACGCGTTGTTGTCGACGGTGCCGTGGCGAGCCGAGCGCCGTCAG
ATGTACGACCGGGTGGTCGATGTGCCGCGGCTGGTGAGTTTTCACGACCTGACCATCGAA
GATCCGCCGCATCCGCAGCTGGCGCGGATGCGCCGGCGGCTCAACGACATCTACGGCGGC
GAACTGGGTGAGCCCTTCACCACCGCCGGGCTGTGCTACTACCGCGACGGCTCTGACAGC
GTCGCCTGGCATGGCGACACCATTGGTCGCGGCAGCACTGAGGACACTATGGTGGCGATC
GTCAGCCTCGGCGCCACCCGCGTCTTCGCGCTGCGGCCGCGTGGCCGCGGTCCATCGTTG
CGACTGCCGTTGGCGCATGGCGATCTATTGGTGATGGGCGGATCGTGTCAACGCACCTTC
GAGCATGCGGTGCCCAAGACATCGGCGCCGACGGGTCCGCGCGTGAGCATCCAGTTCCGG
CCGCGCGACGTCCGCTAA

Community Annotations Pending Curatorial Review

Field	Value	Status	Creator	Date
Interaction	Regulatory Rv2720	active	harsharohiratruefriend	2012-10-05
	Structural Analysis authors,L. Aravind,EV. Koonin The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases. Genome Biol. 2001
Interaction	Regulatory Rv2720	active	harsharohiratruefriend	2012-10-05
	Structural Analysis L. Rand, J. Hinds et al. The majority of inducible DNA repair genes in Mycobacterium tuberculosis are induced independently of RecA. Mol. Microbiol. 2003
Interaction	Regulatory Rv2720	active	harsharohiratruefriend	2012-10-05
	Structural Analysis EO. Davis, EM. Dullaghan et al. Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis. J. Bacteriol. 2002
Interaction	Regulatory Rv2720	active	harsharohiratruefriend	2012-10-05
	Spectrophotometric Assay authors,L. Aravind,EV. Koonin The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases. Genome Biol. 2001
Interaction	Regulatory Rv2720	active	harsharohiratruefriend	2012-10-05
	Spectrophotometric Assay L. Rand, J. Hinds et al. The majority of inducible DNA repair genes in Mycobacterium tuberculosis are induced independently of RecA. Mol. Microbiol. 2003
Interaction	Regulatory Rv2720	active	harsharohiratruefriend	2012-10-05
	Spectrophotometric Assay EO. Davis, EM. Dullaghan et al. Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis. J. Bacteriol. 2002
Interaction	RegulatedBy Rv2720	active	yamir.moreno	2012-10-05
	Literature previously reported link (from Balazsi et al. 2008). Traceable author statement to experimental support. G. Balázsi, AP. Heath et al. The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest. Mol. Syst. Biol. 2008