Rv3100c - Ssra-binding protein smpB

Expression: Most Significant Conditions for Rv3100c

Protein Domains

Gene Information
Locus	Rv3100c
Symbol	smpB
Gene Name	Ssra-binding protein smpB
Location	3469301 - 3469783 (-)
Species	Mycobacterium tuberculosis H37Rv complete genome.
Length	Gene:483 bp Protein:161 aa
External Links	Tuberculist Target Gene Information String Protein-Protein Interactions STITCH Chemical-Protein Interactions Search Google Scholar
Orthologs
Orthogroup Number	317
Related Genes	Acel_1728 BL1180 CE0814 cg0916 DIP0750 jk0458 MAP3170c MAV_4001 Mkms_1638 ML0671 Mmcs_1613 MSMEG_2091 MT3184 MUL_2407 Mvan_1916 nfa44800 PPA1351 SAV5107
Transcriptional Regulation
Operons	View gene in operon browser
Regulatory Network	Search for regulators of Rv3100c
Expression Correlation	Genes with Correlated Expression Scatterplot of Gene Expression

Sequence

Proteins

>Rv3100c Transcript 1
MSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE
VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV
KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGMT*

Genomic Sequence

>Rv3100c
GTGTCCAAGTCGTCGCGTGGCGGCCGGCAGATCGTTGCCAGCAATCGCAAAGCCCGGCAC
AACTATTCGATCATCGAGGTGTTCGAGGCCGGGGTTGCGCTGCAAGGCACGGAGGTGAAG
AGCCTGCGGGAAGGGCAGGCGTCGCTGGCCGATTCGTTCGCCACCATCGACGACGGCGAA
GTGTGGCTGCGCAACGCGCACATCCCGGAATACCGGCACGGCAGCTGGACCAACCACGAG
CCGCGACGCAACCGCAAACTGCTGTTGCATCGCCGCCAGATCGACACCTTGGTCGGCAAG
ATCCGCGAAGGCAACTTCGCCCTGGTGCCGTTGTCGCTGTATTTCGCCGAAGGCAAGGTC
AAGGTTGAGCTTGCGCTGGCCCGAGGCAAGCAAGCCCGCGACAAACGCCAGGACATGGCC
CGTCGTGATGCCCAGCGTGAAGTGCTCCGCGAGTTGGGTCGGCGCGCTAAGGGCATGACC
TGA

Community Annotations Pending Curatorial Review

Field	Value	Status	Creator	Date
Interaction	Regulatory Rv0352	active	shahanup86	2012-10-05
	Co-expression (Functional linkage) GR. Stewart, BD. Robertson et al. Analysis of the function of mycobacterial DnaJ proteins by overexpression and microarray profiling. Tuberculosis (Edinburgh, Scotland) 2004
Interaction	Regulatory Rv0616c	active	akankshajain.21	2012-10-05
	Co-expression (Functional linkage) T. Parish, DA. Smith et al. The senX3-regX3 two-component regulatory system of Mycobacterium tuberculosis is required for virulence. Microbiology (Reading, Engl.) 2003
Interaction	RegulatedBy Rv0491	active	yamir.moreno	2012-10-05
	Microarrays. mRNA levels of regulated element measured and compared between wild-type and trans-element mutation (knockout, over expression etc.) performed by using microarray (or macroarray) experiments.. T. Parish, DA. Smith et al. The senX3-regX3 two-component regulatory system of Mycobacterium tuberculosis is required for virulence. Microbiology (Reading, Engl.) 2003