Rv3403c - hypothetical protein

Expression: Most Significant Conditions for Rv3403c

Protein Domains

Gene Information
Locus	Rv3403c
Symbol
Gene Name	hypothetical protein
Location	3822262 - 3823863 (-)
Species	Mycobacterium tuberculosis H37Rv complete genome.
Length	Gene:1602 bp Protein:534 aa
External Links	Tuberculist Target Gene Information String Protein-Protein Interactions STITCH Chemical-Protein Interactions Search Google Scholar
Orthologs
Orthogroup Number	9252
Related Genes	MT3511
Transcriptional Regulation
Operons	View gene in operon browser
Regulatory Network	Search for regulators of Rv3403c
Expression Correlation	Genes with Correlated Expression Scatterplot of Gene Expression

Sequence

Proteins

>Rv3403c Transcript 1
MLAFPYLMTMITPPTFDVAFIGSGAACSMTLLEMADALLSSPSASPKLRIAVVERDEQFW
CGIPYGQRSSIGSLAIQKLDDFADEPEKAAYRIWLEQNKQRWLAFFQAEGGAAAARWICD
NRDALDGNQWGELYLPRFLFGVFLSEQMIAAIAALGERDLAEIVTIRAEAMSAHSADGHY
RIGLRPSGNGPTAIAAGKVVVAIGSPPTKAILASDSEPAFTYINDFYSPGGESNVARLRD
SLDRVESWEKRNVLVVGSNATSLEALYLMRHDARIRARVRSITVISRSGVLPYMICNQPP
EFDFPRLRTLLCTEAIAAADLMSAIRDDLATAEERSLNLADLYDAVAALFGQALHKMDLV
QQEEFFCVHGMNFTKLVRRAGRDCRQASEELAADGTLSLLAGEVLRVDACASGQPFATMT
YRAAGAEHTHPVPFAAVVNCGGFEELDTCSSPFLVSAMQNGLCRPNRTNRGLLVNDDFEA
SPGFCVIGPLVGGNFTPKIRFWHVESAPRVRSLAKSLAASLLASLQPVALAPC*

Genomic Sequence

>Rv3403c
ATGTTAGCCTTCCCTTATTTGATGACTATGATCACTCCACCTACCTTCGACGTTGCGTTC
ATCGGCAGCGGGGCCGCGTGCTCTATGACTCTGCTGGAAATGGCCGATGCCCTGCTGAGC
AGCCCCTCGGCATCGCCCAAGTTGCGCATCGCGGTGGTGGAGCGAGACGAGCAGTTCTGG
TGCGGAATCCCCTATGGCCAACGCTCCAGCATCGGATCGCTGGCCATTCAGAAGCTCGAC
GATTTCGCCGACGAGCCGGAAAAGGCCGCCTACCGGATCTGGCTGGAGCAGAACAAGCAG
CGCTGGCTGGCGTTCTTCCAGGCAGAGGGCGGTGCGGCCGCGGCCCGCTGGATCTGCGAC
AACCGCGACGCATTGGACGGCAACCAGTGGGGGGAGCTCTACCTGCCGCGGTTTCTCTTC
GGTGTATTTCTGTCGGAGCAGATGATTGCCGCCATCGCCGCGCTCGGCGAGCGTGACCTG
GCCGAAATCGTCACCATCCGCGCTGAGGCCATGAGCGCCCACTCCGCAGACGGCCACTAC
CGAATCGGCCTCCGCCCGTCTGGAAACGGTCCAACGGCAATTGCTGCAGGCAAAGTGGTT
GTGGCCATTGGCAGCCCCCCGACCAAAGCCATCCTTGCGAGCGATTCCGAACCCGCATTC
ACCTATATCAACGATTTCTACTCCCCCGGCGGGGAGAGCAACGTTGCGCGACTGCGCGAT
TCGCTCGACCGCGTCGAGTCGTGGGAGAAGCGCAACGTACTGGTCGTGGGTTCCAACGCC
ACCTCGCTGGAAGCGCTCTACCTAATGCGTCACGACGCGCGCATCCGCGCACGCGTCCGG
TCCATCACCGTCATCTCGCGCTCCGGCGTGCTGCCCTACATGATCTGCAATCAGCCGCCG
GAGTTTGACTTCCCGCGGCTGCGCACGCTGCTCTGTACGGAAGCGATCGCCGCGGCGGAT
CTCATGTCCGCGATCCGCGACGATCTCGCGACGGCCGAAGAACGCTCGTTGAACCTGGCC
GATTTGTACGACGCCGTTGCCGCCCTGTTTGGGCAGGCGCTGCACAAGATGGATCTCGTG
CAGCAGGAAGAGTTCTTCTGCGTGCACGGCATGAACTTCACCAAGTTGGTGCGGCGTGCG
GGACGCGATTGCCGCCAGGCATCCGAGGAGCTAGCCGCGGACGGCACGCTGAGCCTGCTC
GCCGGCGAAGTACTGCGCGTGGATGCCTGCGCGTCCGGCCAGCCGTTCGCCACCATGACC
TACCGAGCCGCGGGAGCCGAGCATACCCACCCCGTCCCCTTCGCTGCGGTGGTGAATTGT
GGCGGTTTCGAGGAGCTGGACACGTGTTCCTCGCCGTTCCTGGTCAGCGCGATGCAGAAC
GGGCTGTGCCGCCCGAACCGCACCAACCGTGGCCTTCTGGTTAACGACGACTTCGAGGCC
AGCCCAGGTTTTTGCGTCATCGGGCCCCTAGTCGGCGGCAATTTCACTCCCAAGATCCGT
TTTTGGCACGTCGAGAGCGCACCGCGCGTCCGGTCGCTGGCGAAATCGCTGGCGGCCAGC
CTGCTTGCTTCGCTCCAGCCCGTCGCACTGGCCCCATGCTGA

Community Annotations Pending Curatorial Review

Field	Value	Status	Creator	Date
Interaction	Regulatory Rv2711	active	shefin84	2012-10-05
	Co-expression (Functional linkage) P. Prakash, S. Yellaboina et al. Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames. Bioinformatics 2005
Interaction	Regulatory Rv2711	active	shefin84	2012-10-05
	Co-expression (Functional linkage) GM. Rodriguez, MI. Voskuil et al. ideR, An essential gene in mycobacterium tuberculosis: role of IdeR in iron-dependent gene expression, iron metabolism, and oxidative stress response. Infect. Immun. 2002
Interaction	RegulatedBy Rv0981	active	yamir.moreno	2012-10-05
	Microarrays. mRNA levels of regulated element measured and compared between wild-type and trans-element mutation (knockout, over expression etc.) performed by using microarray (or macroarray) experiments.. H. He, R. Hovey et al. MprAB is a stress-responsive two-component system that directly regulates expression of sigma factors SigB and SigE in Mycobacterium tuberculosis. J. Bacteriol. 2006
Interaction	RegulatedBy Rv2711	active	yamir.moreno	2012-10-05
	Literature previously reported link (from Balazsi et al. 2008). Traceable author statement to experimental support. G. Balázsi, AP. Heath et al. The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest. Mol. Syst. Biol. 2008