Rv3560c - acyl-CoA dehydrogenase fadE30

Expression: Most Significant Conditions for Rv3560c

Protein Domains

Gene Information
Locus	Rv3560c
Symbol	fadE30
Gene Name	acyl-CoA dehydrogenase fadE30
Location	4000432 - 4001589 (-)
Species	Mycobacterium tuberculosis H37Rv complete genome.
Length	Gene:1158 bp Protein:386 aa
External Links	Tuberculist Target Gene Information String Protein-Protein Interactions STITCH Chemical-Protein Interactions Search Google Scholar
Orthologs
Orthogroup Number	21444
Related Genes	MAP0507 MAV_0601 Mkms_4779 Mmcs_4693 MSMEG_6012 MT3665 MUL_4125 Mvan_5285
Transcriptional Regulation
Operons	View gene in operon browser
Regulatory Network	Search for regulators of Rv3560c
Expression Correlation	Genes with Correlated Expression Scatterplot of Gene Expression

Sequence

Proteins

>Rv3560c Transcript 1
MQDVEEFRAQVRGWLADNLAGEFAALKGLGGPGREHEAFEERRAWNQRLAAAGLTCLGWP
EEHGGRGLSTAHRVAFYEEYARADAPDKVNHFGEELLGPTLIAFGTPQQQRRFLPRIRDV
TELWCQGYSEPGAGSDLASVATTAELDGDQWVINGQKVWTSLAHLSQWCFVLARTEKGSQ
RHAGLSYLLVPLDQPGVQIRPIVQITGTAEFNEVFFDDARTDADLVVGAPGDGWRVAMAT
LTFERGVSTLGQQIVYARELSNLVELARRTAAADDPLIRERLTRAWTGLRAMRSYALATM
EGPAVEQPGQDNVSKLLWANWHRNLGELAMDVIGKPGMTMPDGEFDEWQRLYLFTRADTI
YGGSNEIQRNIIAERVLGLPREAKG*

Genomic Sequence

>Rv3560c
ATGCAGGACGTCGAGGAGTTCCGGGCGCAGGTCCGCGGTTGGCTCGCCGACAATCTGGCC
GGCGAATTCGCGGCACTTAAGGGCCTCGGCGGGCCGGGGCGCGAGCACGAAGCGTTCGAG
GAACGCCGGGCGTGGAATCAGCGCCTGGCCGCCGCGGGGCTGACCTGCCTGGGCTGGCCG
GAAGAACACGGCGGGCGGGGGCTCTCGACCGCGCACCGGGTGGCGTTCTACGAGGAATAC
GCCCGCGCCGACGCGCCGGACAAGGTCAACCACTTCGGCGAGGAACTGCTGGGTCCGACG
CTGATCGCGTTCGGAACGCCGCAGCAGCAGCGGCGCTTCCTGCCGCGCATCCGCGACGTC
ACCGAGCTGTGGTGTCAGGGATATTCGGAGCCCGGCGCTGGCAGCGACCTGGCCAGCGTT
GCGACCACCGCAGAACTCGACGGCGACCAGTGGGTGATAAACGGCCAGAAGGTGTGGACG
TCGCTGGCGCACCTGTCGCAATGGTGCTTTGTGCTCGCACGCACCGAGAAGGGCTCGCAG
CGCCACGCCGGCCTGTCGTATCTGCTGGTGCCGCTGGACCAGCCCGGCGTGCAGATCCGG
CCGATCGTGCAGATCACCGGCACCGCGGAGTTCAACGAGGTGTTCTTCGACGACGCCCGC
ACCGACGCCGACCTGGTGGTCGGCGCACCGGGCGACGGCTGGCGGGTCGCGATGGCGACG
CTGACCTTCGAGCGCGGCGTCTCGACGCTGGGTCAGCAGATCGTCTACGCCCGTGAGCTT
TCCAATCTGGTCGAGCTGGCGCGGCGCACCGCCGCCGCGGATGACCCGCTGATCCGGGAG
CGGCTGACCCGGGCGTGGACCGGGCTGCGCGCCATGCGCTCCTATGCTTTGGCCACCATG
GAAGGGCCAGCCGTTGAGCAGCCCGGCCAGGACAATGTGTCAAAGTTGTTGTGGGCCAAC
TGGCATCGCAACCTGGGTGAGCTGGCCATGGACGTGATCGGTAAACCCGGAATGACCATG
CCCGACGGCGAGTTCGACGAGTGGCAGCGGCTATATCTATTCACCCGCGCCGACACCATC
TACGGAGGATCCAACGAGATCCAGCGCAACATCATCGCCGAGCGGGTGCTCGGTCTGCCC
CGGGAGGCCAAGGGATGA

Community Annotations Pending Curatorial Review

Field	Value	Status	Creator	Date
Interaction	Regulatory Rv3557c	active	jgalag	2012-10-05
	Co-expression (Functional linkage) SL. Kendall,P. Burgess,R. Balhana,M. Withers,A. Ten Bokum,JS. Lott,C. Gao,I. Uhia Castro,NG. Stoker Cholesterol utilisation in mycobacteria is controlled by two TetR-type transcriptional regulators; kstR and kstR2. Microbiology (Reading, England) 2010
Term	EC:1.3.99.- Oxidoreductases. Acting on the CH-CH group of donors. With other acceptors. - NR	active	nsampson	2012-03-05
	Human inference of function by sequence orthology authors,R. Van der Geize,K. Yam,T. Heuser,MH. Wilbrink,H. Hara,MC. Anderton,E. Sim,L. Dijkhuizen,JE. Davies,WW. Mohn,LD. Eltis A gene cluster encoding cholesterol catabolism in a soil actinomycete provides insight into Mycobacterium tuberculosis survival in macrophages. Proc. Natl. Acad. Sci. U.S.A. 2007