Rv1297 - transcription termination factor rho

Expression: Most Significant Conditions for Rv1297

Protein Domains

Gene Information
Locus	Rv1297
Symbol	rho
Gene Name	transcription termination factor rho
Location	1453204 - 1455012 (+)
Species	Mycobacterium tuberculosis H37Rv complete genome.
Length	Gene:1809 bp Protein:603 aa
External Links	Tuberculist Target Gene Information String Protein-Protein Interactions STITCH Chemical-Protein Interactions Search Google Scholar
Orthologs
Orthogroup Number	513
Related Genes	Acel_0633 BL0398 CE1303 cg1354 DIP1040 jk1347 MAP2464c MAV_1514 Mkms_3967 ML1132 Mmcs_3893 MSMEG_4954 MT1336 MUL_3967 Mvan_4345 nfa10520 PPA1254 SAV2915
Transcriptional Regulation
Operons	View gene in operon browser
Regulatory Network	Search for regulators of Rv1297
Expression Correlation	Genes with Correlated Expression Scatterplot of Gene Expression

Sequence

Proteins

>Rv1297 Transcript 1
MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM
RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV
RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ
QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR
TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG
SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT
TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL
AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR
NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT
RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD
SD*

Genomic Sequence

>Rv1297
GTGACCGATACGGACCTCATTACGGCTGGCGAAAGTACCGACGGCAAGCCGTCGGATGCC
GCTGCCACAGATCCCCCAGACCTCAACGCCGACGAGCCGGCCGGCTCGCTGGCCACCATG
GTGCTGCCCGAACTGCGTGCGCTGGCTAATCGAGCCGGCGTGAAGGGAACATCGGGTATG
CGGAAGAACGAACTGATCGCTGCGATTGAGGAGATCAGGCGACAGGCCAACGGCGCCCCA
GCCGTTGACCGGTCGGCTCAAGAGCACGACAAGGGCGACCGGCCGCCCAGTTCCGAGGCA
CCGGCCACCCAGGGGGAACAGACCCCGACCGAACAGATCGATTCCCAAAGCCAACAGGTC
CGCCCGGAGCGGCGCAGCGCCACCCGTGAAGCGGGACCCTCCGGTTCCGGTGAGCGTGCG
GGCACAGCCGCAGACGACACCGACAACCGCCAAGGCGGTCAACAGGACGCCAAGACCGAG
GAGCGTGGCACCGACGCGGGTGGCGACCAAGGGGGTGACCAGCAGGCTTCGGGCGGTCAG
CAGGCGCGCGGCGACGAGGACGGAGAAGCGCGTCAGGGCCGGCGCGGACGCCGGTTCCGC
GATCGGCGGCGCCGCGGTGAACGATCCGGCGACGGCGCCGAGGCTGAACTGCGTGAGGAC
GACGTCGTCCAGCCGGTAGCCGGCATACTCGACGTCCTGGACAACTACGCGTTTGTGCGC
ACCTCCGGCTACCTACCCGGTCCGCACGACGTGTATGTGTCGATGAACATGGTGCGCAAG
AACGGCATGCGCCGTGGTGATGCGGTGACCGGTGCGGTGCGGGTGCCCAAGGAAGGGGAG
CAACCCAACCAGCGGCAGAAGTTCAACCCGCTGGTCCGCCTGGACAGCATCAACGGCGGA
TCGGTCGAAGACGCCAAGAAGCGGCCCGAGTTCGGCAAACTGACGCCGTTGTACCCCAAC
CAGCGGCTTCGTCTGGAAACCAGTACCGAGCGGCTGACCACCCGGGTCATCGACCTCATC
ATGCCGATCGGCAAGGGTCAACGCGCGTTGATTGTGTCGCCGCCCAAAGCGGGCAAGACA
ACGATCCTGCAGGACATCGCCAACGCGATCACCAGGAACAACCCGGAATGCCACCTCATG
GTCGTGCTCGTCGACGAGCGGCCTGAGGAGGTCACCGATATGCAGCGCTCGGTCAAAGGC
GAGGTCATCGCTTCAACTTTCGACCGGCCGCCGTCGGACCACACGTCGGTCGCCGAGCTG
GCGATCGAACGCGCCAAGCGGCTGGTGGAGCAAGGCAAGGACGTCGTGGTGCTGCTCGAT
TCAATCACCCGGCTAGGCCGCGCTTACAACAACGCGTCGCCGGCGTCGGGCCGGATCCTG
TCCGGTGGTGTCGATTCCACGGCGTTGTACCCGCCCAAGCGCTTCCTGGGGGCCGCGCGC
AACATCGAAGAGGGCGGGTCGCTGACCATCATCGCCACTGCGATGGTCGAGACCGGGTCC
ACTGGTGACACGGTCATTTTCGAGGAGTTCAAGGGCACCGGCAACGCCGAGCTCAAGCTG
GACCGCAAGATCGCCGAGCGGCGGGTTTTCCCTGCGGTCGACGTGAACCCTTCTGGAACC
CGCAAGGACGAGCTACTGCTGTCGCCCGACGAGTTCGCTATTGTGCACAAGCTGCGCCGC
GTGCTATCGGGCCTGGATTCCCACCAGGCCATCGACCTGCTGATGTCGCAGCTGCGTAAG
ACGAAGAACAACTACGAATTCCTTGTTCAGGTGTCCAAGACCACGCCAGGGTCCATGGAC
AGCGACTGA

Community Annotations Pending Curatorial Review

Field	Value	Status	Creator	Date
Interaction	RegulatedBy Rv0348	active	yamir.moreno	2012-10-05
	Microarrays. mRNA levels of regulated element measured and compared between wild-type and trans-element mutation (knockout, over expression etc.) performed by using microarray (or macroarray) experiments.. B. Abomoelak, EA. Hoye et al. mosR, a novel transcriptional regulator of hypoxia and virulence in Mycobacterium tuberculosis. J. Bacteriol. 2009
Interaction	RegulatedBy Rv1221	active	yamir.moreno	2012-10-05
	Microarrays. mRNA levels of regulated element measured and compared between wild-type and trans-element mutation (knockout, over expression etc.) performed by using microarray (or macroarray) experiments.. R. Manganelli, MI. Voskuil et al. The Mycobacterium tuberculosis ECF sigma factor sigmaE: role in global gene expression and survival in macrophages. Mol. Microbiol. 2001