Rv3840 - transcriptional regulator

Expression: Most Significant Conditions for Rv3840

Protein Domains

Gene Information
Locus	Rv3840
Symbol
Gene Name	transcriptional regulator
Location	4313567 - 4313980 (+)
Species	Mycobacterium tuberculosis H37Rv complete genome.
Length	Gene:414 bp Protein:138 aa
External Links	Tuberculist Target Gene Information String Protein-Protein Interactions STITCH Chemical-Protein Interactions Search Google Scholar
Orthologs
Orthogroup Number	34118
Related Genes	CE2746 cg3210 DIP2250 jk0116 MAP0191c MAV_0185 Mkms_5126 Mmcs_5038 MSMEG_6421 MT3948 MUL_5013 Mvan_5665 nfa1290 PPA2190
Transcriptional Regulation
Operons	View gene in operon browser
Regulatory Network	Search for regulators of Rv3840
Expression Correlation	Genes with Correlated Expression Scatterplot of Gene Expression

Sequence

Proteins

>Rv3840 Transcript 1
MAGCIQRFSHVRCLGPGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQT
VELATGLHLDHYAEVGFSEFADLVDAFDPLAGVDLPAGCQTLDGRAALGYVRTRATPRAD
LEGSDVPVPAAAFETQP*

Genomic Sequence

>Rv3840
TTGGCCGGCTGCATCCAAAGGTTCAGCCACGTACGTTGTCTAGGTCCGGGGTTGGCATCC
GACAACCCGACGACACTGATATCGATCCCGCGTGACTCTTATGTACCGATCCCTGGCCAC
GGCCGGGACAAAATCAACGCCGCGTTCGCGCTGGGCGGGGGGCGGCTGCTGACCCAAACG
GTCGAGTTGGCTACTGGCCTGCACCTGGATCACTATGCCGAGGTCGGATTCAGCGAGTTC
GCCGACCTCGTCGACGCCTTCGATCCGTTGGCCGGCGTCGATCTACCGGCAGGCTGCCAA
ACACTTGACGGACGTGCAGCGCTGGGCTACGTCCGGACTCGGGCCACACCACGGGCCGAT
CTAGAGGGCTCCGACGTGCCGGTGCCAGCCGCCGCGTTCGAAACACAGCCCTAA

Community Annotations Pending Curatorial Review

Field	Value	Status	Creator	Date
Interaction	Operon Rv3839	active	ashwinigbhat	2012-10-05
	Co-expression (Functional linkage) DM. Hunt, JW. Saldanha et al. Single nucleotide polymorphisms that cause structural changes in the cyclic AMP receptor protein transcriptional regulator of the tuberculosis vaccine strain Mycobacterium bovis BCG alter global gene expression without attenuating growth. Infect. Immun. 2008
Interaction	Operon Rv3839	active	priti.priety	2012-10-05
	Co-expression (Functional linkage) DM. Hunt, JW. Saldanha et al. Single nucleotide polymorphisms that cause structural changes in the cyclic AMP receptor protein transcriptional regulator of the tuberculosis vaccine strain Mycobacterium bovis BCG alter global gene expression without attenuating growth. Infect. Immun. 2008
Interaction	RegulatedBy Rv2711	active	yamir.moreno	2012-10-05
	Microarrays. mRNA levels of regulated element measured and compared between wild-type and trans-element mutation (knockout, over expression etc.) performed by using microarray (or macroarray) experiments.. GM. Rodriguez, MI. Voskuil et al. ideR, An essential gene in mycobacterium tuberculosis: role of IdeR in iron-dependent gene expression, iron metabolism, and oxidative stress response. Infect. Immun. 2002